The Academy Assembly, the Academy of Science’s highest body responsible for the highest priority decisions related to the ASCR, held its XXXIX meeting on December 16, 2011. Among invited guests were Petr Fiala, the Prime Minister’s Chief Science Advisor; Karel Pospíšil, Head of Board of Public Applied Research Institutions; Václav Pačes, President of the Learned Society of the Czech Republic; Rudolf Zahradník, Honorary President of the ASCR; Helena Illnerová, former President of the ASCR; Václav Hampl, Rector of Charles Universtity of Prague; Přemysl Sobotka, First Vice-President of the Senate of the Parliament of the Czech Republic, and Vladimír Haasz, Vice-Chairperson of the R&D Council of the Czech Republic, and others. The main agenda item of this meeting was discussion the results of the Evaluation of Academy Institutes.